Scaffold Ga0222714_10003716

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10003716
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15332
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F009526	Metagenome / Metatranscriptome	316	N
F009679	Metagenome / Metatranscriptome	314	Y
F026507	Metagenome	197	N
F038217	Metagenome	166	Y
F040539	Metagenome	161	Y
F040620	Metagenome	161	N
F044983	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100037162	F040620	N/A	MTRWVQVKHDDLLEYVAMVEHVIKDHNKLQQEMKDAKELASIIDATYKQRLDRLTDFILDVHPANYKYEQGLMDAYNIVSGNE
Ga0222714_1000371620	F009265	AGG	MKYEITTKQGNKYIVSDDSAWLWIEIERELGFTVSQAAEKMSQGSLDVITCMFFKAAKQAGHTKLPTQQAWVTNEFDSFEVVEENPKES
Ga0222714_1000371621	F009526	AGG	MPATYITGRNLTLSINSVSYADQASTVTLERENNQQVLEVLSGRAYKTVDKTATLNVELFLDDTSSAGIISALWDAANTAPDTSLPFSFDVNGDTFTGSVFPVFPTVGGAATDVLTTSLSFVVEDGTVARA
Ga0222714_1000371623	F009679	AGGAGG	MPLIALSELKSVLGIGNIYADSDVQEVADAAENIILSYLIFDDVAINGVQLTNNVARFYCYDNTFVIGQALTVTGCGSPFNGSRTVSKTGYDEYGVSWFEAAITNADITKRRIIPNGRAVLTSQATLYDAVPECREAALAVACDLWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG
Ga0222714_1000371627	F038217	N/A	MPEDKPMGIYLSLNSAISMANWLAPTDVAALTLARRIATALDTAFDMGDLKEATPLAAKYLSVLQQLHLTVETRTTGKQGEENDGTNHVGNYLRLLQTKDSKQAAKPAKRRASGSATS
Ga0222714_100037164	F044983	AGGA	MSDEVWASIERKIKGHYLAAQNLPSSCPECASILEPVDFGVDPDTNERLWVTHCCGKWDKYLEVLGPRDLI
Ga0222714_100037165	F026507	GGA	MICEHGADAPKYCAICRHQGIMGKTEGITIAKESQLNWHDEAVICIRQMARTGKPFTAEDVVNEIGAPTGSGKVIGAAFNTVARSGMIWRCGERPTDRKSSHRRMLAVWRGGQVQEQTRMFDE
Ga0222714_100037169	F040539	AGGAG	MMKWLRKYVEAITADTYTYVGLLIAFFTLDGSAKKVTGLLILIGVLVWLISLPLRDTPDE