Scaffold Ga0222714_10003610

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10003610
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15603
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (55.88%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F008358	Metagenome / Metatranscriptome	334	Y
F035276	Metagenome / Metatranscriptome	172	Y
F043358	Metagenome / Metatranscriptome	156	Y
F066719	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000361015	F001881	N/A	MTERAQEFMNAVWEHRNNGADTEEKLVAAILCLAAEKVQFFTAQDGRIVLDKNDMLQLAEELNQ
Ga0222714_1000361020	F008358	N/A	MSTSYIYFIIFFCIAYLIVTDSSVARGFYMLTQLARVEYEKTKWWILHNPANPIVKYLMWKKAYKLAKELQQELESRNK
Ga0222714_1000361022	F066719	AGGAG	MVVLFASTIISCSDALNLIHRLTRVVGLSEVQRTEIVQEIRKVVPSCPVKVVKQ
Ga0222714_100036107	F043358	GGAG	MKVYDYRIVEDLNLKTLKPYFYIQSYSIKDQKYFLYSDATFQTLQEAQEAIRLLRKYNEPVYHYVED
Ga0222714_100036108	F035276	GGAGG	MSSYISCYNQETRELEHYKVSYDVSVYIQQLENEIKYGSGGVKRLYPFRFGDARK