Scaffold Ga0222714_10003471

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10003471
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16037
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F015601	Metagenome / Metatranscriptome	253	Y
F024558	Metagenome / Metatranscriptome	205	Y
F035768	Metagenome / Metatranscriptome	171	Y
F039639	Metagenome / Metatranscriptome	163	Y
F039640	Metagenome / Metatranscriptome	163	Y
F054039	Metagenome / Metatranscriptome	140	N
F061859	Metagenome / Metatranscriptome	131	Y
F062765	Metagenome / Metatranscriptome	130	Y
F065787	Metagenome / Metatranscriptome	127	Y
F066790	Metagenome / Metatranscriptome	126	N
F078723	Metagenome / Metatranscriptome	116	Y
F080054	Metagenome / Metatranscriptome	115	N
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100034711	F066790	GGA	MLSNLTQRFRNMFKPYTLEDFISESDPKDYKDIQRLEAVWQNYQERKLFNNCY
Ga0222714_1000347111	F054039	GAG	MIEVSANYKRLAKVLNKTRKSLTQTCHELGIDVDDIEDHVLVEVIDQCSHCNIWSQQLVKDLDYNPVCPVCVRLTGL
Ga0222714_1000347114	F080054	GGAG	MSTQPNYTAELEALILDVLLPVYEQHCRQRGIASLRSEINPELLKQLKKKKTIPRLFMPKIS
Ga0222714_1000347115	F078723	N/A	MSYDILINSLVNGESVTISKPDGTTYQEPRPPNRTALAAAKALQNLQNQLNFGTSAINQLTKERNELMDSITRLQEQNKRLQDEINAKTSATSSTAGDSDSSAAK
Ga0222714_1000347120	F065787	GGAGG	MKKLEYYEIRQTCKLIDYDLKLAGRGKLWVEVYRDDQYEYRALFPDVADWSAIPMTILTHPIHETQTNLS
Ga0222714_1000347124	F024558	AGGA	MIVVLYTEDFEPIIPIDLPLWLLDRLEQEGAVRVAVSKPMGFKGEKIPVGMVGNEDMPTVRIRYEKLRWHDGSLKTLLVTPDEELALTLTPEWLPGQRAPIQLYLNTVRKMHEELIKQIRKNQS
Ga0222714_1000347127	F039639	AGGAG	MNIDREFVKWFYEDAYPEQGSNRRQVYSVTQSSQNINVIDYWMREAFKAGAQAATYGYEVNALEQFEAFNINRNYPL
Ga0222714_1000347129	F061859	GGA	MTIEIALIILGLALAACYVVLEYQKLAKPPYQEPVKPDMVDQWVAATKADTLDNIDNWNAKVGDKIWHKEAAAELESTPINPQAAWPFPTGRQP
Ga0222714_1000347130	F081346	GGAG	MAKPDPNKPITHINPPTTVPTRVMPHKPGYADQVVVPETEANPDKPKKPKKPRK
Ga0222714_1000347133	F035768	GGA	MKITIEDRLLAAYHAQKLRLRDREDEDYRARIEDKAFEKIIVERVRRNLRLDLDKGTNIDLEV
Ga0222714_1000347135	F062765	GGA	MSWYRTRGLTQTETKIATENTMFTTEGEPYTSESITTHYSCGRIDVHNVPGEPYGDEINVPPMLSTDWAMFSNWLDTVKTLSIWTLPDLVTAYQQHNPKITWDTYDG
Ga0222714_1000347139	F039640	N/A	MNIEELLKQSQKTAGEIDILHYTNLILLEACKLIKDTPTTSAFTTFDAAVAETQRADCFRAVYDQIVRNIEDVAATK
Ga0222714_1000347142	F004133	GGA	MKYTKEITDKLIADYKAGIAVADISAELNVPERSVIAKLSSLGVYVKKSYVNKRGEVPVKKSEHIERIAELLDVDEELLESLEKVNKTVLKLIENKLAQSDPKLHYTRQTDHLFADV
Ga0222714_100034718	F015601	GGAG	MAGYTKEFLIDAFMSRYLGCDHLSIEKLERLEKMANDLYDRVGRDSFRVYACLDAEAIREYKNKATA