Scaffold Ga0222714_10003153

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10003153
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16996
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052556	Metagenome / Metatranscriptome	142	N
F053897	Metagenome	140	Y
F063632	Metagenome	129	N
F065720	Metagenome / Metatranscriptome	127	Y
F067673	Metagenome	125	N
F101045	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000315310	F101045	GAG	MATSLLSCNVTFNVFTELQDYTLINSAIENIPQEIKVRIWPRDLVDKTKLRRQNCEVFFIPCITLSWVQKMRMCARLAREAQEPWFGYAHDDATISSEDFNKLIEARKTVNENTYWIVTNNPKHPEINADIYALINTKNYWAIGGHDENFHMYYADIDFHLRQAQNGKGQIGVCTPSTTHIGSVVLKKLEGLQSIYYKMMLEKDRSYFKAKHPSFDI
Ga0222714_1000315314	F067673	N/A	MNSLIQQVSETVGVLPDSQDKEAQVLAWLNRAAVMIYDQYDLPGSVFEQFFCVDNNKHVITFPWYVGAIRGVRWHDSSRLVTTRDMRPRYHAVPWTQPYLQWRQIAATPLHTPLTNAGPLTFQINAIETQPFDIIVNGQTSLAANTTEVITFTPGDLVKTSVNLFEPESPFGITSIKKSAYTNSDVVVRMAATQLEVARIANNQLYASNIRVQILDWNAGTPFILGEDCVEVLYKQRFSPFVNLNSIWTDERLVQALVYGVKYIYAFEKEKMDVAEASKQVMAEICKNVCENLESGTELMVQTERHAAQDAAIMFPVWPLVQGGVRNLW
Ga0222714_1000315316	F053897	AGG	MSSCINAVKLFEWVLRHPGREATFGEASDIDIVMHCDRILKSENTELFVLEKENETPLVALWCELDLERKNIHILNILGDRGCLFNAVSAWQALYPGWTVSGARRKSKQNVQYRVSDFIK
Ga0222714_100031532	F052556	N/A	MIKLELTPEEANATLQLIDIAIKAGGIANAKAGLPIFEKIMAAANASGVSQPAQPELPLA
Ga0222714_100031534	F063632	N/A	MKSAIEFIGNFFQNNGHLRGALYFSIAALTPMAASFTEWSSEDGPKNWYEVVALVIGSIISGLTAIRAYLDTHLSKTKETK
Ga0222714_100031536	F065720	AGGA	MSFLSDLIIKLLRWFYELSQKDTPQEDAKKDDKLKQNLLARIDDHERKLLIESDLRAQRTAAEVSRASQSPRVDFRLKRPSGVVKK