Basic Information | |
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Taxon OID | 3300021961 Open in IMG/M |
Scaffold ID | Ga0222714_10002997 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17506 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (37.04%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012972 | Metagenome / Metatranscriptome | 275 | N |
F015087 | Metagenome / Metatranscriptome | 257 | N |
F015991 | Metagenome / Metatranscriptome | 250 | N |
F056578 | Metagenome / Metatranscriptome | 137 | N |
F099221 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0222714_1000299721 | F056578 | AGTAG | MIFVLLTILISYVYIALKYFIPVPTLLDTVFPPLIYWTISLAALEILIIISPFGLVAGAPMLMLMWQIISTWIDYVSKNSGNQKLKKDKDNFKNLLLAPVRAIVSLWNAIVNGLSSWFRVVTEYWNNLTKLYTETLNLISNSFKFLSEQVTKLWTELVIAFKALWDQSIKLLRLIVTMGGTIDENIAPPLPEQFVKSTSAPKPSTPISKTPTFGSFKPPIFKF |
Ga0222714_1000299725 | F012972 | GAGG | MDWVVFKEDVRNCFKKEQFNFLFDFSDVKVVQVATIPRLIWEFSSLMRKLKPKTEKQVIRSAIVTNPMFFTFKFVESIIWMYRNVRPIKVVRTLPEAYDFLG |
Ga0222714_100029976 | F099221 | N/A | MQELSLSQKVGVAVAVAPTVLMFGPIPIILASGDFLMRQIIKHKVQDNNVKFKPR |
Ga0222714_100029977 | F015087 | N/A | MYGYSVWLVPLNRRLLTKVYKFRHIPHITISTNHKQIPDPDNLGRLYDVVNFKPYGKIGKQYEVDPLHALGWECDVEDLDIHHTPHMSHVYSFFPYDKVFPVYPTPIRLIAEVCVADTRSPNWEEWKIIKEKIPR |
Ga0222714_100029978 | F015991 | N/A | MAFLPFLRHGDLYDLLDTTSKVLNELPNMEKQFNTKMADRYLYTRTHTTDEGFEIEMHLPGVGKDNIHIMLSSDDHEVTIGYGENRSASFDLPSYVDVSDEGYKASYVDGVLRLFFKMRTSDKKRREIKLD |
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