Scaffold Ga0222714_10002538

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10002538
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19194
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (11.32%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F025233	Metagenome / Metatranscriptome	202	Y
F037129	Metagenome / Metatranscriptome	168	Y
F047578	Metagenome / Metatranscriptome	149	Y
F048842	Metagenome / Metatranscriptome	147	Y
F053077	Metagenome / Metatranscriptome	141	Y
F077051	Metagenome / Metatranscriptome	117	Y
F077197	Metagenome / Metatranscriptome	117	N
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000253812	F025233	N/A	MHLIIANLMFVLQLHSGYIIPTDDVDGRTIYSIPSAGIEYAYKAEIVQYLETGQFSYDETLDDKVDSSMFKN
Ga0222714_1000253819	F098924	N/A	MNVLGKLFNKKKTYPKDNKFEVLIIGEDKTDFQEMLGITDERREELMKLAFDSYKTEDLYSSACKMAVAGCKHINEVVFTISMMAKLKEMANNPLSAILSGINHGE
Ga0222714_1000253820	F096905	GGA	MESKIFTSVIGFNFELNLVDNDGQPIRTGARRVEHLSSETPEVGTKIGGENWFTNFNEPLLAKIRDYKRLNT
Ga0222714_1000253822	F053077	N/A	MLYQLPNGKVIYLTIEQYLELTDEDIQYLMSLNAGEFALNPFTDSAVVENTKEKYYDFDYLTDDESENIISDDEPFDDIIDLSGPTDI
Ga0222714_1000253824	F000716	N/A	MEKLKQDVRNYQMRSHTVMSYEQDGYNSYQNYLYKRALYGLDALTEKELATMCSKKKQRIVNVYKRAQVTLNKFKQQITIQYSNFLFSTLFPESPITQALLADTETDEKFKNTLTFKDLGITKEQIISIFMLEGILPKNFLSLEGPQNQLPRLKNDKTERM
Ga0222714_1000253829	F047578	N/A	VKAICIDSSNKPAKIPVEQWIKQGETYTIIKVVKMGLQDGRYGVLLKEVQMSADCFPYEYYDADRFVPLDERVANMEEEAVKEADLELI
Ga0222714_1000253835	F048842	N/A	MKNKAGVIILTLLPMIIGAILLFGYFRCVYKMCTCNWEPVGKAEIVYTIGTFTGAGAVIGYIPIEDK
Ga0222714_1000253848	F037129	N/A	MMSVNKKDYKVVEEKDGYQTYYVVKKRFLWFFWKTVKNNSGSAMRYTSRKGAQAYINILK
Ga0222714_1000253851	F077051	N/A	MTEQQLIELEFNRVEINDSESQNGYDYYFYTLDLFNNLTLMSVDSDQVQDENWYVYNMDWPDKNFKLQTVDQVQQFLHSVGHFVS
Ga0222714_1000253852	F077197	AGAAGG	MFLPIEFQDEHGSYIEHLNVTHITRISFVNPRNPDAGSKIHLRTGEVLKTIMAFDLLSQAIDESWESASTLILSTVLSEKAKLMKQSDLQNEGIAELDPLSEV