Scaffold Ga0222714_10002450

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10002450
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19611
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046994	Metagenome	150	N
F050308	Metagenome	145	Y
F081233	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000245011	F050308	N/A	MTFPELRLLKYRLLITIIFLTLCSLVASCQITKVDNGFLISREYAEFIAARFDSLEIFKLKHKEAIDKIEACDSILYQSEMVISDMKVQYNTQSDMLRLKDAMIASHERASVVCNDYARQIKKEKRLKKMWKITTYAFISVSLGAITYSIFK
Ga0222714_1000245014	F046994	N/A	MIFRKRNRAEQNEKNFQKWLKTYIPETTKQRIELTRVFTDRAGNNFYILKNPANLTRERAQRIEEAMTAIDYGIHKNEVVEKLSGILETVEDMPWQNMTRDKLKEFHTKSKDQLNDIIYRLKSVKIDDLLLEAGLYFFYIDGENPYIINSETQQRKLDAIKKDDELRAFFLNSIEQILKGSSDIKG
Ga0222714_1000245020	F081233	N/A	MIYRPKIKVHSDAEIEYWKNLINEKRRQNKTLQRWIVMSDVHRPFHNQILWQKVLRLISEMGTNLHGLVIAGDYLDLYTLGSYNAESLANLSGLTLQDEYIDGLQGIDELNGAFKGAKKYFLFGNHEDRYFRHIKEKDNAKYGGALINPTEALYLHERGWDVKTDWQSDYFTIGKHLDIVHGVYTSIHAAKAHLDKTQHSVMFGHTHRVQCYHTGNKAAFNIGGLYDIKSKGFSYMPRFQRQLWANGFALVNVDDAGNFYVEQVNVWADKFLANGKMY