Scaffold Ga0222714_10001912

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10001912
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22934
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036204	Metagenome / Metatranscriptome	170	N
F059901	Metagenome	133	N
F079963	Metagenome	115	Y
F097195	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100019122	F059901	AGGA	MAGHIKRRTIASNLDKVGETVLLEKIASGMTMAGLARELNISNLSLYHWIRKDPDREERFRQARTIAADQWADECLDIADASDSVSANADRLKIETRKWLAGVTAPDKFQAKPTAAVQVNVNQLHLDALRQLNLASSNPHDQIEHIEEEITIDITPPKQVGSHNLDADDLPGVFDED
Ga0222714_1000191224	F036204	N/A	MDMSFGIDTLLTVIAGIFAIIGVWTQLSNRLAILETKLEFGDEKFNGIDKKFDEVMMHLRRIEDKLDNKADR
Ga0222714_100019126	F097195	GGAG	MKQVQAAQLAEWLDNNTRGYTSRDGNRIKIEGEIDAYELLLYVQSLLAGRSTRRIHADNQASYTGRSVFGRI
Ga0222714_100019128	F079963	AGGAG	MTRPTKTNEEKPPVVNEKDAIIAWLRTGKMNMFERNTRWLADRIAEGDHLK