Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10001421 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10001421 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26956
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (46.94%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

26956

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (46.94%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003889	Metagenome	463	Y
F015201	Metagenome / Metatranscriptome	256	Y
F019817	Metagenome	227	Y
F020342	Metagenome / Metatranscriptome	224	Y
F027818	Metagenome	193	Y
F055679	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000142123	F055679	GGAG	VIDLTTGWVQHPGVTGGFHLVYIDNLVGEISIVTGPKGSGLMGHNDPGVETTYEVWFPGMCNPTGYLTLAEVQGIIKFMRQREEERLAWQEEED
Ga0222714_1000142127	F027818	N/A	MEKAVHEGREFLAITMVVNDMYEGVCRIKFNNANGLMTAYNNGTLVVGQQLILTQYDVRLSSIRTHYMSDGDLVALKYPEMALTRVRAIIGSAPRPKVQPAVTAPKAEATLEEIPF
Ga0222714_1000142133	F019817	N/A	MSIATLPGLTINQRNLYTYFLGHKKKHGNTPCFVPRCTTQVSRLDQYLQALVKLEQYGLIRVDRTSENYTGWIMTEPKSK
Ga0222714_1000142135	F001165	N/A	MTNNTPRIPDSLDMQRLQAMQLVAKMKESAEKHGIGFIGGFIAPNGEKFVMSNMNEEDSQALLPEDLK
Ga0222714_1000142136	F001120	GGA	MTKRSLISFDRTIHGVNITEHGIKSVTKAIKLGPFQLTLNANLNGVKGSVSVPGTGVSIPNIKLI
Ga0222714_1000142137	F020342	N/A	MSAYIDQLTLFDRINLAACAQRRASANVLDSTRFEGEFSTAFLWTKYRLTKTPHYSYIED
Ga0222714_1000142138	F001807	N/A	MNVLAIEHTSFTDTHVTVTAVVDEMRLLYRATALDPEEWAPALCTATVELDPEEPIPLDEDGFCAYLDHIDPQWQLVDTSDYE
Ga0222714_1000142147	F015201	GGAGG	MNKALIVYLVDKRKKLARKDVESKHATTELKKQSAATF
Ga0222714_100014215	F003889	N/A	VGPEYLAIGLTAIISAITGGSWAANRLLDRQRERIQQSFDYTGSQKRRIDILEDQINRMPMEYVLKVDFLREIQEMHNNFREINNKLDKLMEKILSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10001421

Overview

Ecosystem & Geography

Associated Families

Sequences