NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10001361

Scaffold Ga0222714_10001361


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10001361 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27555
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (19.15%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F001338Metagenome / Metatranscriptome719Y
F001725Metagenome / Metatranscriptome645Y
F001780Metagenome / Metatranscriptome635Y
F001923Metagenome / Metatranscriptome617Y
F002038Metagenome / Metatranscriptome600Y
F002413Metagenome / Metatranscriptome561Y
F003583Metagenome / Metatranscriptome478Y
F003714Metagenome / Metatranscriptome472Y
F004790Metagenome / Metatranscriptome423Y
F006659Metagenome / Metatranscriptome367Y
F007416Metagenome / Metatranscriptome351Y
F014261Metagenome264Y
F105031Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100013611F001780N/AMLSNTSVTKASINDLSAPAKDAKSFDAWFFSQPKKVQEKMRENGVLPYREMCQSRHVFQVDANHPAWSTRDGDNLRKETEAFISRDHVGVMLKGFIDALAATDNFAFRRHVETVRWALSLPGCLDSRTIGKMYGRSHFWMRSRAKEIQRAVNSDAIGMFPHVNARRDKHKQARPRPAPDA
Ga0222714_1000136112F002038N/AMDRTHATPKGILTIAKTVPGQYALLLFLDGFPYVELTARRHADFLTEVNAWKRKTYPSLARSDVRFFTLAPSGEIKELAFNR
Ga0222714_1000136116F006659N/AMKKDTLKPSAEYRVIADSSYILLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATIKAGEVAKAEQSK
Ga0222714_1000136119F000957N/AMSQFKHLDGMTALLSEIYEINERVMCGDLVSAKAAIASTRMKKLLHHYHEALHEDGATKVSLQAYVAAGGWVGITYSYEVDGFEVAGSQVPRRV
Ga0222714_1000136120F105031GAGMPDPSHRPYDPMTIIRPHAKPRLWWLFPWSYARTLHTAANALRALTDRQDKALEMQAHIIVDQSEEIANLRRRVEDLNEALHGPRK
Ga0222714_1000136122F003714N/AMPNANHPYTDHLTFAGRSIPLKRPMAVYAANRLQAILPQIAALNAAGKTQADAAAALGTTVCSLRKWIEITGTTWTNLKVRGPYKTRS
Ga0222714_1000136123F014261N/AMKALIALTFILILGWTAAVTFFGPELYRAINGPEPVKAKVVRRHR
Ga0222714_1000136124F003583N/AMRKQKPSPAPSGGNNLLLAVCLLTAFAGLSAFASAYIAGVVLDLLQSRDALVMIVTDAGIKSDSVSVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFIRSRRQNAS
Ga0222714_1000136125F001923N/AVSAAPFNPEDIPKEAKDGLVAAILGGLAMTARLLLSTEPVSLGWVVRRVMAAAITAALVGYAIQEHIQSPGLRMGVVGAAGYAAPECLDYLLKYVKARGEKEVAAVTKPSHAKAKAKPGPKRRK
Ga0222714_1000136136F001725N/AMAAISNGTTCIYGVAGTVANLFVQSYSLSSSFNADVTVVDETGLTKTHRLDDRKSEITIEGIAKTTSMPVLGAALSFTVNTASAYPAGSASASFVGTITKIDDKGSNKGFTAVTITAIDYEGITPA
Ga0222714_1000136137F001055AGGMGTKSIRHIVESTVATYLSTQTGLTSVQFLTGDSATTQTLPKAVVLCDSARAPGDLPEGEGNYSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFTASGDASCYDVTIGSEDEGIDERSWATAFSFDVLVVLPAA
Ga0222714_1000136140F001298N/AMSLYSEFLADAKEMIADFGVAGSANSGAITFQCLISDPAVATVLEAGGYCERTQYSVRLPAATASWTLPDGSIGASAAIISSGAPIASLGQGKKIVAGGKTVRITTQTYKPGSAWVTLLVIDDNQ
Ga0222714_1000136145F007416N/AMASGIFIGLTECELLDIKAKALSMITEGKTLMSYSDSGSSASKQFAMPPKEMLSEAMFALSRLDPATYGRRVTIISTDWQNRND
Ga0222714_100013617F004790N/AMEALTRETIQWGLRIGITPDRMAFLAACPKFTVCHGNRKSERNVKDNPNHHLQRLGSCWWFRLRRRGKDIVENIGQDLTIARKRRDEMLAAFDAGKPIPYLANK
Ga0222714_100013618F002413N/AMTDAPTPMAAPTLVLICGFARAGKDTLASGLLEWSTRPAEHINFADALKEAANQYIDYLGIEGDFFREDFKVENRDFLVNAGKFARRLDRDVFARHFANWCPVMKHADQPSPETVVCSDWRYINELRVCQDILWERGWKVRTVYVATAGIGPANDEELDSIAEIRAAHLFDQEYIFKPNSRNQIMSEGRLLAKAWKL
Ga0222714_100013619F001338N/AMENQNDRPPLKSIEVNGTYKLKLIKPKFEKVKHNEDGTSSCRLFFLDDQGNCLSKSYGSKYAKPLAMLIGKFSGKYTEELRLDATPAEFMTYCEPAFGKTCLIGVEAIPNGEWNGKPQFKYKLTFPKGSQKPVVPDANTEAPPF
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