Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10001208 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10001208 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29304
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (83.02%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

29304

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (83.02%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020531	Metagenome	223	Y
F027488	Metagenome	194	N
F042308	Metagenome / Metatranscriptome	158	Y
F049581	Metagenome	146	Y
F102814	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000120824	F042308	AGAAGG	MGWDVTQVGSNITTRKFINWYLKTTYDGVYEPVKVFEGKNEFGQKAFYVALKKLDDNSIFACVFLTRRKNGSVAVKVLGESEGPCYYEAPESFINVLTPAKTLEGAWWRNRCLEKEVA
Ga0222714_1000120838	F020531	GGGGG	MNNQQLEQSTWQKSSAMNLSDISILIGFVGIYDLRVQVDELKVRAWGESLDSDISLDEAKKIVSWHYANFDSAVNPSHINREWRRRLADSRERERSRLMSLQFEEMEKKKASPEFVAQIKKELLEKLNRGKDAPLEDDNEQVAPNS
Ga0222714_1000120839	F027488	GGAGG	VSIRWITKVWADSPYDGTKLLIHLALADISHDDGRFFASQSNLASKGRCSVEYVRKVINEMIADGHLKIITKGNSRGNATVYQLIWKKLPNSLGEEQSLGGVELPNSDTPNSPTLEVQLPNSTPYHPSYTSVLSTTKSDETAVAVVALSEAVARKWWEKQRVKPLGKSAWHSLLAICQAAEKRGYTAEQIEQALDYIGTVPSMRQMDLVLRGVGVKTKHEQSAIRAIDLAEKFRNESI
Ga0222714_100012084	F102814	AGGA	MAGSKPRDNQRQRLYDAQREGGFYKVEGDMTIKEAQKFVNQVLSHKRTRTLFEKYRFQFSKYPSKIIVEAGSGSHATMRYRDWELVRLIRLTKAGRTKFTVLHEIAHHITWGHESHGAEFADVLLQFVTRYLGKEEADKLANAFHNKRVKVMTKSGKPRVPRKREITSAKLVA
Ga0222714_100012088	F049581	AGGAG	MTKQEGRPFDEDVLIDQIGRMNIFAISGGRVGVTKNNQGETVEIELPVGYGYRVSIKLGWDDTYTVSRQFVRKGVVTDKGTIEGVYCDQVGEIAYKASCFRNVEFGKVSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10001208

Overview

Ecosystem & Geography

Associated Families

Sequences