Scaffold Ga0222714_10001186

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10001186
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29583
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012345	Metagenome	281	Y
F015976	Metagenome / Metatranscriptome	250	Y
F029371	Metagenome / Metatranscriptome	188	Y
F059779	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000118634	F015976	N/A	MRKLILILSLILAIIATGCSANYHLRKAIKKGYSCDTIADTITISTIDSIPYVLRDSIAWEKVIVQKDTIVRYKRSFVPKTRYETKIEYRLKRDTIKLLQKVEVVKYKTEKQKNKKPNLWLFIIGFVAGFVAKWLMKYAKTPL
Ga0222714_1000118639	F012345	N/A	MRFKLTYQVGLAVVQEWIFTSKSLCYWKKMDLIETGRYNDGKFKITPQ
Ga0222714_1000118643	F059779	N/A	MDIGLQKIKTSVNLWTIKRRIQNARENILKTRPEATDYIKGAEQSEEELLEAISFLTNLYEHAVAISRENTILASRNMELQRQKNELENQIKYNKIEEQL
Ga0222714_1000118644	F029371	AGAAG	MTREQKLVALCAFLPVLGDFIEDLNDQSVFRQDLKRKANILLQEIQRTDRAVLRIDEANAEQVYNEQVDLQIAFRQWIEEVIKL