Scaffold Ga0222714_10001159

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10001159
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29871
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (40.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004740	Metagenome	425	Y
F087117	Metagenome	110	N
F088772	Metagenome	109	N
F100729	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000115910	F004740	N/A	MAMDNPFLGIDAATLSTLKTETLAAIRACLLNTSYSLNGKSVTRADLGRLNTMLGQIQAAIDDANGVTDTVTFVSFNGN
Ga0222714_1000115914	F088772	AGAAG	MSLLSFLASAAGGTLLGGATQFLGSLVGEAKEWSASKRRIAEIAALKEKQIAVAEVEAFAKAVEGTNSTTYSLPPNAASWMHGLMTIAAFCTQMVRPCMVAGACLYIWTRPNEELAGLHGEILTVSFACIYFWLGVRHQLSKSK
Ga0222714_1000115917	F100729	N/A	MNWKQLVEAQNRKTYILPPGWDSRDKIAEQLDCSVDNVRVLLGPALRAKTIEVGQFPVWDDVTKKVVRITAYRKRPTIESGKAK
Ga0222714_100011593	F087117	N/A	MSDDAPNPAELLAKANVANITKKLKAGKTLTASERKALSEFEADRSGGEWVSGPKQLAEELGLSRQAIYDARKRYPDEAPKPDGKRENVPAWRAFCAEKLIGKDTATKTLAELKADLMREQILLARSKNRREEQEVVERETVREMLRLLGTKLDLLLRLKLEVELGPRVAGKSAAEANVEGALILDEIREVVNANLARFETDAIKATVAEE