NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222714_10000822

Scaffold Ga0222714_10000822


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10000822 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35314
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (50.79%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002317Metagenome / Metatranscriptome571Y
F003661Metagenome / Metatranscriptome474Y
F007971Metagenome / Metatranscriptome341Y
F036214Metagenome170Y
F038601Metagenome / Metatranscriptome165Y
F082606Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000082236F038601GAGMKLYAPENKGKYVWQTADAKTKQVSYSVTTTRTPPPDACYGHPMGKYDDQGMYLTFCPNVGADDPKSPLAARYVVHPMAPAERDKADSERIWRQI
Ga0222714_1000082248F036214GGAMTLKPDPTSAFNVEKEARRLENTPNAGPIAAQLYRAWNMQQTLLQQATNRIAALELQLMKDQADA
Ga0222714_1000082250F082606N/AMSLVVLSAQCAGMVAPVIPLGQKTYKMSPNSRGVRAERDLWRFHPGMPCYVRGWPQVEATVIAKVEGCSWPTYIVQSFSTGASYQVSQLYLSKRPIEQR
Ga0222714_1000082259F003661N/AMDPTTAAVVAIIIAAGSEIIALLPIKENSWVQLLLKALKVLFPKR
Ga0222714_1000082260F002317AGAAGMLCLTMDSHEEVYAAPPEQPNPFNQAVPALLTAAVIGLGGLFMQVAKLDQSVSTVAADIQELKNDSKERLADLEGRVRQIEMTVGRQK
Ga0222714_1000082261F007971N/AMAVKSKTALGRVDHKAGRPKTTSQGYGQHSRPRRRGKKKLIGQGR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.