Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10000523 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10000523 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43756
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (77.63%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

43756

Total Scaffold Genes

76 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

59 (77.63%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F010026	Metagenome / Metatranscriptome	309	Y
F011387	Metagenome / Metatranscriptome	291	Y
F019467	Metagenome / Metatranscriptome	229	Y
F035291	Metagenome / Metatranscriptome	172	Y
F067680	Metagenome / Metatranscriptome	125	Y
F085364	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000052312	F004722	GAG	MSPARTGRELVMEWLQREIRLAKTADLQRAANFLEWARGIRAGCSKQRSGARRAQSNAWRKKVDDDIRW
Ga0222714_1000052333	F019467	GGAGG	VSNGEWATARERKRSREAEREAARRLKIEWADKLWLAQNHPCDDAVLAWLAENRAEASKIGSSRWNLETLPDLHDRQRKLRAAEAFQAVLDRASISHQTLTAEAVLAAGGFPQNPQPEVVENKKRRAHAGKAQPSRKRSS
Ga0222714_1000052335	F035291	N/A	MPTASPALLERVDRLAGCSGHWVLIRDGQPETDCSHQWHQSPEEHLQTCLAERWRGVSLGFVPSYCGYSDYSRTGLVGLSNFRVLTDPASTPDPHGGILEVGYGWNGRGVVLDLLRVPADVIETVEALEHYPLISEDDHSQLECDGISADWGGESIADRVRTLQQLGLCVFAARDDAAPWRDGFDRLREMILENLNEYPTALA
Ga0222714_1000052343	F011387	GGAG	MAAVALTAKDYFTNLVEYTGGTLTAVNDWMEVPAQSPSYTFAVTVTGGANFQLALECSFNGNGNWFTIDNGKTINSNGEYAYFYDGKPAAKIRVRISSISSGTPSVTPHIAVAYHG
Ga0222714_1000052344	F067680	N/A	MTIQTITGSCLHIEIDGEEGITHATFVFKTPSVPDTLGNFIKMLALGIEVLVPIENPEDEEEDDD
Ga0222714_1000052353	F085364	GGA	MKLVRLFVLQDNSRHMVDVPYGHHTEAQADLEMAGAHVYHAVILNPPLKTRRSTSGAKLKKRLY
Ga0222714_100005237	F003805	AGG	MRPIEHTTESSFHKAATDQWLIDRFNSGDYRGLLEAALILNTLHQLEQTKARWAIREAAENLTEQFGLDRDSA
Ga0222714_1000052375	F010026	AGG	VAVKSKVGTARIEHKPGKPKRTRQGQGQHSLPNHGRKKMRGQGKS
Ga0222714_100005239	F006109	N/A	MTRYVVMAGDRWVTAVYGPGNGIGFTATKEDASSWVTYERAVAAARVVANCVDDLVAVHSVEEPNYPRSWKGCTN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10000523

Overview

Ecosystem & Geography

Associated Families

Sequences