NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10000399

Scaffold Ga0222714_10000399


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10000399 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50667
Total Scaffold Genes99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (20.20%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010391Metagenome / Metatranscriptome304Y
F014593Metagenome / Metatranscriptome261Y
F017988Metagenome / Metatranscriptome237Y
F033777Metagenome176Y
F036229Metagenome170Y
F084130Metagenome / Metatranscriptome112Y
F095363Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000039920F010391N/AMTEDIFEKLSFEKVVVTMEESGCDADFYYYTMDIGDICLMSNSDDEAAKNGWEAYIFDSFTMKIKGSGDLEDLVRIIQNNTNG
Ga0222714_1000039921F033777N/AMKIERYEQAYEFFITPTIKYTYDKLLFGFYCVDFIWLRWGFSLSWGHKK
Ga0222714_1000039932F095363N/AMKRLFTLVALLATFSSFGQQLMKWHKVTNYMSTSEMVWSAIDQEYLFFDNHDYKAESAVWDITLDVVAGEGFITSGSITYRVNKSTIEQRDGISMVVMEAFNERLNIPVLVIASTIEEKFKLAIYVKDHKKVYYFFE
Ga0222714_1000039941F017988N/AMKFLELTGFGNAHKHIIALRSISDIEFTKNYTHISLNNGNSVNVIETEKEIIDMINYQNGDIINKEYIDNLNVQIEAYEEMNADRYAFDKDELPF
Ga0222714_1000039953F014593N/AMFDTPVEIHGVVLTPEELDRQNFTIFVNNYKKAVFRSQEVQEKFGLDLWNWEDMFAKSLEGIINYAFTPESVEVILWYVYEHSLAEDEGDFVVTFGEDDYIIKTADDLYDLVLLLEEE
Ga0222714_1000039954F036229N/AMITYCYYYIKNDPNKEILGKALTTSRLAAAKEFAAQKCLPLKTFLTIWAIGKKKVF
Ga0222714_1000039977F084130N/AVNYQVINANNKLFKVVRIIRDNKQWDLDTLRQLWHCTHTFRKEGAIYFVREIEDVEYENI
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