Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10000362 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10000362 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	53854
Total Scaffold Genes	70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	62 (88.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

53854

Total Scaffold Genes

70 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

62 (88.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002653	Metagenome	539	Y
F005233	Metagenome	407	Y
F023041	Metagenome	211	Y
F042903	Metagenome	157	Y
F050379	Metagenome	145	Y
F090308	Metagenome	108	Y
F091934	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000036230	F042903	AGGAG	MAKLPYTYTICPDQEAPKQFTASCKDMGELLRHSPNGDLTINQKRTGAWDMWSGNHMGFIEEALHEMTKKEKP
Ga0222714_1000036231	F002653	GGAG	MLEADFSMTEAELERRVHAMSDEEQAHFKLLIHKLVMCYGEGKAQGVVIIGRAEDSMAGVVTLNCNEMEASQLMLAANDFFGFLNLLDAPPKENFN
Ga0222714_1000036240	F023041	AGGAG	MKNTPYDTGKVKIGLLYTPPSPLPTPEETWVQGLLLGDRQGMDELTLTTIQSIGLIAFIAIVMLLTGGTSNA
Ga0222714_1000036244	F050379	AGGAG	MTDAQLQIIADDLIAKYKHEIVRDGDWWHGTDEYSFNIHSPDNDDWFNVNVYKVDPVTGMDNYEWMIDLPRVLIKGESK
Ga0222714_1000036251	F090308	GGAG	MYETYLKLTPNALHNRLTERKLHPAEIERIKQEVADLKETLRVSRITRTQRKAEWDKVLQPLRYEINNAKVGMRYGGEKVSPERTLAFGEYIRIMEKLVAMLDAPYKALDHTPIQIARDKGLPNDGEHWTDWIPARVKDKVTLLFNEVPVTPRGKRKTPFQRTMLPHQHETAKVRLLTKTRKEMETLERQIAINATDQRTAKLRRIKQAIKIIEALDKNEAVPATWTKLSLGED
Ga0222714_1000036252	F091934	AGGAG	MRNLIQPVTKEVGIVTIRGRDYHMQTIIYGTNHQVHVFVKGALHLRGLVFETQQAYDQWKNGMHQLDLPFGEKVSPSAL
Ga0222714_1000036256	F005233	N/A	MLEHLIHGEFHPDVVDMTAATLLPLDKAEPATIIDAQVKTAEWLKDLELDDEAAESKADAQAARQSFASLVTGQPPQNTQQALANIKAPAAVQHLVGMLTAYDWAFVEQAKELRGFAVAKILEEVDHPDARIRLKALDMLGKVTEVALFTERVEVKKTEMSDIELENRIKDKLNRFMGVIDVVDVSEEAVKDADED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10000362

Overview

Ecosystem & Geography

Associated Families

Sequences