Scaffold Ga0222714_10000264

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10000264
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62616
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (19.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006840	Metagenome / Metatranscriptome	363	Y
F025478	Metagenome / Metatranscriptome	201	Y
F032249	Metagenome / Metatranscriptome	180	Y
F046995	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000026422	F025478	N/A	MAIKKTTTKKAPVKKASTGMSISAPAKAEMRKWEIESALSTLKRADEIRKDAKMMNDVKKLAQEQMSVLKTFSR
Ga0222714_1000026448	F046995	AGAAG	MIWLKILLAAFAIGCIAMFWIVINAMTRPIYNKMYNMYMEDEKGRAIANYTIAALIIVSFLFGYMVG
Ga0222714_1000026450	F006840	N/A	MKPFKSLRGRTILLDVPKRKESSIQLSAKDEEVMMAEAVKMWNKLNVFAVGDKVEDVKVGDKVYVRTSALNLEVVERIDIDGETKLVLNEGDVVIIW
Ga0222714_1000026454	F032249	AGAAG	MGKFILLIGKDATEIFDYYKVKEMHGLNRADAQAEEVDKTVGNGVYIYGFTNYDPRDKKLTAKAPYKPFLFLNKKHFKETAEDITMVMHEAVHMGILLNGYNIDTEEDFISQGEEWANKIVKLLKLDKFTK