Scaffold Ga0222714_10000191

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10000191
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73072
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (81.91%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F009144	Metagenome / Metatranscriptome	322	Y
F032097	Metagenome	181	Y
F050361	Metagenome	145	Y
F051925	Metagenome	143	Y
F063693	Metagenome	129	Y
F078715	Metagenome	116	N
F088892	Metagenome	109	N
F088897	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000019121	F063693	GAG	MIGTKCSEKFLHYNICMAKLFIKSDEYSEPVKTFLKKYIRQNTPYNLAVHEQNADICISLFIPEYPAEERFNAYFYNNTEGMEDLANKIYYQCSKADIKTRPVSKRSLPREEYELDFKCPTLIINLTNDSKEIDEEVYALVIGQGIVSYLNPGTVFDTFSVKDKIKKPGDKSFVNRKYIQEPTSNTRLLFKK
Ga0222714_1000019125	F088892	N/A	MDYIEGLQKMPNKPKVKVVENTSEYGLYVWKMETGKIFGDGNGSFMNIPARKYDIGAINRITQAAAHYGAGPGKAVFMPGVTRVTEEENSVQIDRMKQGYIPDEFDTGAFIDAAKGLKKHGDD
Ga0222714_1000019133	F088897	AGGAGG	MVVYRPENIINLYVWEQFKTHAPAFYNLYGPTSGGPDIVPFFPAPANNLPTAVIDNDLPYVMFDKFSRVRGGYKYFYPIKTDQMRYTIVGGSLYDINRNQQDRYATTINLTSLIQSILDREDDAARDINEFTKTLPDYNNPNYPELSKYYFHCVNVYQSGFTDTQQDVSDFMEYNPTRDLIIKYDYHSKQFNE
Ga0222714_1000019148	F050361	N/A	MYAHKSIKRFSLDGEIYDDAHIVRLKEQYTSMIIAGMRSDGYVPRYDIDTDFTLSYNGRTFNFEISIYGVYVGKRTAECIEGIDKNKPVMASSTQKIKSEEVC
Ga0222714_1000019160	F000264	N/A	MYANENWLRKRFLIDKKSPEDIAKECGVSVETIYVYLGKFGLRKSRRK
Ga0222714_1000019179	F051925	AGGA	MIIHEKGFQYDFFAQEWSHECGACGEELYAPTKKHLEGNFWIHTHSSRCLGGW
Ga0222714_1000019184	F032097	GAGG	MEFKLEHELDRGPIVRWIANRCIDISQMISSWAYPYADMYTAVWDDYEDESDLAEPHNQMGIFDNLEVLPQFERLTEDLI
Ga0222714_1000019193	F009144	AGGAG	MFKEIDYNKHFVIGTPLVGWKADMGEEMSWLENSKQIAEKFPNVKFFTALELDSRGLEPFSRVLSALKEINGDFWTYTINDMESTVTSSNRWIRIETGRNLIREFAQRLRKTSGHHWGEDCTEENVGVVNYDAILYVDSDIILTAEIIEKLFEVDHPIVSADVPVYGLKGKAVSTNPRIEEHWNTAGMLLVNSPAFYDLPWYHNAYLNLSDDPTFQSMAERLHRRVGAEVFEDTYGMTWVRKDIKAEHKGQLLPVENRKIPPRNI
Ga0222714_1000019194	F078715	N/A	MLVFSQATPAHASDSIRYKSTEIQVIPKGKWTTLKFNGGKTEIQGNGKRSLFCYQAGIDTKGKKSPSYIKLRITRIVPGPNDPSATNTYFFTEKPGSEFVASNCWNIITKHPVVVQIRITGGSKTYNSDIRQFKMWTPNADYPQDFSDFIPETTIN