Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10000082 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10000082 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	114802
Total Scaffold Genes	175 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	135 (77.14%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

114802

Total Scaffold Genes

175 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

135 (77.14%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F000808	Metagenome / Metatranscriptome	882	Y
F005092	Metagenome / Metatranscriptome	412	Y
F015730	Metagenome / Metatranscriptome	252	Y
F026861	Metagenome / Metatranscriptome	196	Y
F029721	Metagenome / Metatranscriptome	187	Y
F081257	Metagenome / Metatranscriptome	114	Y
F083931	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_10000082145	F000808	GAGG	MEYNYSLTISYDGELRSTLRSADMLEMVDAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVAIK
Ga0222714_10000082147	F005092	AGGA	MDKLEYALRTIANCDLCYGQGYQGWAVGEDYDMEDCICNPYGLILENGEVIFDNGLLSEPELFTTQEAY
Ga0222714_10000082148	F029721	AGGA	MRSYSIVDLLIGQYYRPTSMARKFQGGEINFAEKRDDVWVGTDYQAYSIRFNGDKWATIAVRVSDL
Ga0222714_10000082150	F083931	AGGA	MTNSTYTDFPFTVSGINFISRVYSHSEMLAQINALPKPIFEQMNQEAVKEIIGDPSLLTSDELLAELDRINEGGSHAFILLGDNN
Ga0222714_10000082151	F026861	AGGA	MKLDEFKAYIEAQRKAQQLTNLEKIATIINNPKEKDNN
Ga0222714_10000082155	F015730	AGGA	MLSNKTLEKIVYEYQHGGVQAYHPEISLSERKALLRYLFSLPAKCAPECEATHKN
Ga0222714_10000082156	F081257	AGGA	MKTLSYTAEKNGTLVEVINRLMVSEYQINDLLDSLVRWGYTIESVRVDEGDNSQHWQG
Ga0222714_1000008268	F000264	AGGAGG	MGMPAKLYTNELWLKKRYHMDKKSPEQIAKECGVTVETIYVYLAKFGLRKSKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10000082

Overview

Ecosystem & Geography

Associated Families

Sequences