Scaffold Ga0222714_10000046

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10000046
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 145015
• Total Scaffold Genes: 165
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 119 (72.12%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F007028	Metagenome / Metatranscriptome	359	Y
F007312	Metagenome / Metatranscriptome	353	Y
F012571	Metagenome	279	Y
F015212	Metagenome / Metatranscriptome	256	Y
F021091	Metagenome / Metatranscriptome	220	Y
F025678	Metagenome / Metatranscriptome	200	Y
F026542	Metagenome / Metatranscriptome	197	Y
F101035	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_10000046114	F007312	AGGAG	MATFYVGPRPVLKGRSTAEMTNPYTSMTGKAKGTGTYSYYPLYSTSHVLDGAPDNHFAPGTGQFPGNRFLSQLFNGTTLYVHPLSGTFPNGSATYDGARFRPLEFKGLSGAAAFPSGYGHADRVSEYSYNNYIFDGVTSANAFANTGHAARTEAQGAPASFGVFRPTEAQGVTSAKVFTAGYGQANVTSDYGREKVKEWYGVPSAKAL
Ga0222714_10000046139	F012571	AGGA	MSKNVNDPDDVIGVCTECKSDQPMSYMYKSPFAQDGKDVPCKYCGGVVMITYRESRNSSLDSSDKNRGIQ
Ga0222714_10000046151	F026542	N/A	LNIQTLEKLQQMLTEFLGPQIQEVITAYTDQSTSFKYFIEIPDSDTIDLGLDALASLVAKSSNVYGRAARFAGMARANYKLIEGKYKKVYKSSRVGKNEAEREAAAMEAAEEEYNALITCEAIVSLAESMESAARIASESARKLMDKVQSMQIASARESKGFYQETDFSTY
Ga0222714_10000046156	F007028	AGGAG	MPKITKTAQEQSTTDSQIDQVVNLMAQEISISTNPVFICGVNRKINIGNFENIDVYAGITLPLGDVSLENKEDLRNAIEEAAAYGFSLVSKETGDRYLLIKESQQGK
Ga0222714_10000046161	F101035	AGGA	MEAVVVAVIAAVGGVLAALVQKGRAENKADHNVVASMLVTVKDDIINLHHKIDHVDEQVDKVDDKLDGHIDWHMKKNSKRKN
Ga0222714_1000004633	F021091	AGGA	MSDWKSYIDQKGDFQLANFLYKSINELMKNSLDMGTLLSNDQHKLRAYKEQTKKLFKNKWFDIANCLEYFDVIEKCICFSEQRENYCEICKGARYKISSYLSADEVKEISTFVNAAQDQEVQEKLQKGLKKLLEDMQ
Ga0222714_1000004652	F025678	N/A	MSFDFVENFTVQLPNFADSNYDFSEAFNSKHGLIIEVAAIHERTNCQLQ
Ga0222714_1000004654	F001360	AGGAG	MSLAKFRKVGTKTGSGRFVVSEGIAPAAYLLPHPGLPTWYFDSEDDRFEIVITKGTILSVVADSNGDARIVPANGTSSSKSWGDSMPSTWDPLDGATPNYSSGATDTVSVPARSIPIGVAQYDLYRPFDKGTSQGAGFITHGYVEYPMVSGVNADVTVGSVVRSDVMGRPVLAAASDFYDSSAVYAYLQVGKVVEVEKFATNFDDGLLSYMQLPSDPGALKTVYELTRAGSFSGKLGIRSNLDVNNVIGAFRVNLTI
Ga0222714_1000004658	F015212	AGGAG	MATQYPNSLDNFINPTATDTLNSGTVPHADQHANLNDAVEAIQTVMGLNPAGAHLTVKDRIIYAEAQISNQSVLNGLTDVTIATVNSGDVLRYNGTQWVNYSEENLVDGGNF