Scaffold Ga0222715_10256942

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10256942
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1013
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031532	Metagenome	182	N
F085566	Metagenome	111	N
F093962	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_102569421	F031532	N/A	RITKKKVKTFLNLRFRKEPMMMYDDTLDVAVEVIQDFLNCDPMDVGKLQANTYDTIYNIEREINESNS
Ga0222715_102569422	F093962	GGA	MKATVNFEWRSIDEPTFEPEEIIRRALYDAGYSVGHIFVQGVFDEDKTKFFGVDGDRLPHEEVVWKQHERMTKXYHMK
Ga0222715_102569423	F085566	AGGA	MIPYEIGKQLIDKIEKELGGKANGHEDYLEGKGTQFSFDLNGKSYSVDLWDEDILNDVXV