Scaffold Ga0222715_10115940

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10115940
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1709
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F037694	Metagenome / Metatranscriptome	167	N
F045702	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_101159401	F045702	N/A	MTITQTLNRTAGRFTTLVVNKGATNNTFCAQITGATEKTVRFYDVNADANRVVPTASVVYARSGKVQYRKPRK
Ga0222715_101159403	F037694	N/A	MLNKEQAFLVNEFIRKHATRNLWEVSDKLYTLLSEIKKVEELPQNNETETASA
Ga0222715_101159404	F006546	N/A	MKWKYIGNRTGDATKGEQYIVEADELTEIYMKEMPYPQYVKVYVVQPPSPRNNFMTMRTGDIIKICNPYYEMMKYSHPGFIPVKE