Scaffold Ga0222715_10085805

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10085805
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2067
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → Pelagivirus S35C6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009502	Metagenome	317	Y
F101202	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_100858052	F009502	AGGAGG	MAIEVKKEEYEHIYDCIVSDQVPPNETAEYLEDKNFYKYYIKRRTLGGLWKRNKDA
Ga0222715_100858053	F101202	N/A	MFGPGRSDGGIVQQASGIRIIGSKATRNGGKQMPRKSKKEISNNEYVNTKKFWVQIDFDDCVSIHEELQAKQMFLGDRNKLVPAEQRLLEFTEDVMFGNYKEVTWQ