Scaffold Ga0222715_10053703

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10053703
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2765
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium TMED32 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016795	Metagenome / Metatranscriptome	244	Y
F086721	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_100537031	F086721	N/A	MKIKNLFFLKAENNKVEAWLTIADNDKVETIRETGVSRKQAIFNLCKQGKLAWNLFAEAKELASKTRDPRSPKRTFVSRESVRDRKLADICDDMRCSVAEAVAFLDRGIAPCGW
Ga0222715_100537032	F016795	N/A	MTKQLEKFMTEELGIIDRLGTDPLEGLDLFEDVSGNIWNLDQIIAAFNDSKK