Scaffold Ga0222715_10041053

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10041053
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3255
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F002455	Metagenome / Metatranscriptome	557	Y
F090286	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_100410532	F002455	AGGA	MTDTRTYYYDIYGKMEPDYESMAAYLLDEGVLFVTSTIDRRTQKECLGLCVLINDYFVPASDAESITYNELPKLYELYKEKQWDGVSQFVADKRGIPNIYWKDKGSAFQKKLDLL
Ga0222715_100410536	F090286	N/A	MNILNIFKKKPSESETPKIEMLLPEPYYVKISLEIEYLLGKQLYIYTTNYTINAENEQLFNESKEKQAKVFNEIIKDIHEKLDDKSSDYVRVGESMLLKKSDFVNARIVYNYKKTNEHPR
Ga0222715_100410537	F000962	N/A	MNIHVPEEIKKKYPQYEFRGKKREINDRIVIEAYNPVTEQTFYYSFEEDFFWMAGQIPDYKLQKP