Scaffold Ga0222715_10031095

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10031095
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3847
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F026438	Metagenome	198	N
F092873	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_100310951	F026438	N/A	MANHINVIGDSYTKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFIGGTLIHMIVQESLTKKLSLDEVIKSELIQTKIDNYEPNDEKDKKKFEFIVKAAPETAQNHLDNIDDLGQYEWSDEQEQVLWTPPVNTYWLMYIDLIGKLAKDKDPEVLGDLKNKFGTVTLTKTKGWTYTNVKCPDRPFYSDVQQVSLYQKATGLKPFLSYASNCDRKLFTQDNCEDLKQENLDK
Ga0222715_100310952	F092873	GAG	MNNILNKKFIEVAAKSGYNSDFIESYMIKKELTAKGFTFRRSALDQLLKKNSKKISDFIRDTYLPKEQKNKFAQISKILNPKKNAPKYFTENDLAFDLSHWFNSFSNGDVLVSPEYFIGDTVEIPVIGSLFGNGQVRLHKGREITKINIHPKYANCHAIESQIGSSRGYMRLFVPSKNICHLANNRFGFAQDKKSKIIWCGYIEPQSNGKYNILDKSYSTGKTYGASVENISLSWSVEIKAEYYPTFYNN
Ga0222715_100310954	F008915	AGGGGG	VNNEVNLDLYEMQSAAHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVATAKFLNCSKFEYHCNVGGVPDLVFKDLKLQVRTQLPKNNNNNSLIIRPKAKPGEFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN
Ga0222715_100310955	F004990	GGA	MYGDPKKKCCACENTADLRESNKYYCCDHYALYVLGKPMSQIEKELNNE
Ga0222715_100310957	F001839	GAG	MKYFEKIDKDLINNRALNSHEKLIYIICKSFKNAPRGCRISHKYLMIRTGIKTKAKLISHLDRLSLFGLMARKQIDNGTCHYVFDKPTMQEYIQHNLNKRRKISLSKNRHKRNLDRALSYPNIINIPKVIK
Ga0222715_100310958	F011253	AGG	MKDRKLEINNIIKNFAKNKSLPYSAAITKIKKDRKGYFQAKDIKQKQKSLSTDRFQQ