Basic Information | |
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Taxon OID | 3300021960 Open in IMG/M |
Scaffold ID | Ga0222715_10024174 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4481 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.0566 | Long. (o) | -122.185 | Alt. (m) | Depth (m) | 29 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010083 | Metagenome / Metatranscriptome | 308 | N |
F010538 | Metagenome / Metatranscriptome | 302 | Y |
F031470 | Metagenome / Metatranscriptome | 182 | N |
F050346 | Metagenome / Metatranscriptome | 145 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222715_100241741 | F031470 | AGGA | MRLNDGISLNKINPYADPMEFTPGVPLGGAYKTVYAPSSEPQVALVNAVRPTGDALGGPLETQMTEPSQGCEKTIAAGWRTPYYCTPGSQDYPLNRKAVPERLYSLAPWEATPKPATDSILVKKEGMDVANLAGNAAASILIALSVMTLIKFL |
Ga0222715_100241743 | F010083 | N/A | MYNLLIKLAGWWYNEDPYRITMPLKMIYDINTKKDCMFPSCEWKRIMEGWPLMKSGEIYITCYYPDFRDAIYVLRRKKPECVENIRYEQEYTYRGSPYSMVTRDPMRKVHHVEESEGMKGPIMIQKVEAIMENGEVKMWDTARFLRYAGPRSDFHNVKDICMKDLFDANEEVPDEWHVYMFGKKIVIDKNEELTPQTLVPGRT |
Ga0222715_100241745 | F050346 | N/A | MIRRPDEVPKSLGNVYSYKQGYSSWKEFIDDRGEEGFKQFLKDLYLKKTHTTSSKCS |
Ga0222715_100241747 | F010538 | N/A | MQTIFFIVLAVAIVGYLVMNREGLRWDRGFAGFRPAVTGVITEGNLEITGNPVEDVAVKALMIKKILDATTEEIFRTKGLKMFPIETVFIQVFDSPDKIKELKQKRPDVYDAYVKFLQARDKDAVLTRGGDGTKQEELARTSLISYLDTLKRDQDYNTVPDNVPATYRCRFLLLETERFYGTEVDVIAIGDENGIKIQGITSQPLKDGDKIKAFQDTIRVGEWMPYDTIANANVPNKSALALAEQAIKDKWGEDLQAYEATATADVGQFETVSTPYLR |
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