Scaffold Ga0222715_10021827

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10021827
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4773
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F005591	Metagenome / Metatranscriptome	395	Y
F010571	Metagenome	302	Y
F047975	Metagenome / Metatranscriptome	149	Y
F100938	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1002182711	F100938	GGAGG	VSDWLEGTKPKYIECLYTTAIEFDLEELDIDYDTIKDYHIKYGTLYVEFKDGTSESYEGNQRETDYKWATSEGVFDESWTLVEGLNXX
Ga0222715_1002182712	F003976	GGAGG	MSKLAREYKYEKECVLHTLDKLEMSVRFLNVWVNEPMGLENAKYVLEKNSNRKYDLLDINMVKELVEEEVRXQLKNY
Ga0222715_1002182713	F010571	GAGG	MSMNTRQAIYIENLYEDFYEKHYEKLSKTSDDVEWIEKEASRLAEIDLDNFEMEG
Ga0222715_1002182714	F047975	AGGAGG	MSMIKEEWAENTVDDMEWKDLARIVYDVMLDSVKDMSDKEFKEYLIECGYDEELIXAXIQDKQYT
Ga0222715_100218274	F005591	GGAGG	MKLYFKSTTLDKEIAWTWVDMDKAYWLSWIPKKSDIKIVTRLNKEQKKEARDELWEELQSSAQFTRDRNNARRRAKRLAQVNKTX