Scaffold Ga0222715_10013586

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10013586
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6359
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035290	Metagenome / Metatranscriptome	172	N
F094525	Metagenome	106	N
F100944	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_100135862	F100944	GGAG	MSTFRIQRTRKAPVAMSQKTNLNTWRDIFDSMNKGNWFLVTKPNYRKVSMAANKYVKGNYRLYKHPSRKDCHVFLKKA
Ga0222715_100135864	F094525	AGG	MITIEGRTFLLTQQTEAIAFLEGMLYDLDRHALVVVSGYGMLLDDHSQLKEFLDNEPNAFIH
Ga0222715_100135866	F035290	GAGG	MIIEKEHCDYYLEVYHWEYTLVDKVVTKKEKNVLSFIGLYRDYDLEFEDQLTILTNLRENLISAYMNWPDGDVAVELTIKEEGINL