NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10013586

Scaffold Ga0222715_10013586


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10013586 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6359
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035290Metagenome / Metatranscriptome172N
F094525Metagenome106N
F100944Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0222715_100135862F100944GGAGMSTFRIQRTRKAPVAMSQKTNLNTWRDIFDSMNKGNWFLVTKPNYRKVSMAANKYVKGNYRLYKHPSRKDCHVFLKKA
Ga0222715_100135864F094525AGGMITIEGRTFLLTQQTEAIAFLEGMLYDLDRHALVVVSGYGMLLDDHSQLKEFLDNEPNAFIH
Ga0222715_100135866F035290GAGGMIIEKEHCDYYLEVYHWEYTLVDKVVTKKEKNVLSFIGLYRDYDLEFEDQLTILTNLRENLISAYMNWPDGDVAVELTIKEEGINL

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