Scaffold Ga0222715_10013429

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10013429
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6402
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F021974	Metagenome / Metatranscriptome	216	Y
F037196	Metagenome / Metatranscriptome	168	Y
F055691	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1001342910	F037196	N/A	MTATSQTITLEQFHDLLADAYAVSVNDTLYFVGYDTDENPYIADNDGDDYVDLSTVDGDIEVHKNYVLFYIQEQPIQLSFLQLKSLTN
Ga0222715_1001342911	F005089	N/A	MNVTDLFDSIKLSEQIALEHYQQLNGVVDYRLPGVCNHYFAKYDLQGQRDGEVCLTCKVSKTVKGQLRYTFQINGKRIAEKQIAAEFNALGAFSN
Ga0222715_1001342913	F055691	N/A	MNTYTSPLTSKVYQIVETSHTRNAWDSDGNLTPYVQSVFEIYHEGRKVQFALSQDRIADSVAHYENPGPDVSSRYD
Ga0222715_1001342921	F021974	N/A	MNTNIVSEIYSYHTNWKEGKVNQMWIEQSGDENKGYSYVAIAYNPEKNVSMEMSNPRTSYHETLNWVRGWCGTFCTLPA