Scaffold Ga0222715_10013268

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10013268
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6442
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008547	Metagenome / Metatranscriptome	331	Y
F054687	Metagenome / Metatranscriptome	139	Y
F088798	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1001326813	F088798	N/A	MNKQIEKLWDLLVNYELASESTLQLVTRLNGYTLETMEDVLYALTGYHSYDQFMENER
Ga0222715_100132687	F054687	N/A	MNNTNPEHLETLDDASLNVLIKHYLSVKERLPDNLRVRDRLVELQQELLSRQPSTIEGMIRQTTDNPINK
Ga0222715_100132688	F008547	GGAG	LSVTIYLTDHNGRKISFFYRIDNERYLTCPQLIWSCREYPKYQGTAESKEDFIEQCKGVIKMINRNLPKECKECGLTSPKMESQSTCPDCLIDNE