Scaffold Ga0222715_10006435

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10006435
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9929
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003440	Metagenome / Metatranscriptome	486	Y
F073631	Metagenome / Metatranscriptome	120	Y
F077233	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1000643513	F003440	N/A	MRYYLGQCEYKWTHANTDMENIWIRRELGDDLYRTVEENNWEWKLLRSSSTSLPGDVYCRCDIYVESEDDKLDTHFALKFPHVKPVEKIS
Ga0222715_1000643518	F073631	N/A	MIAVLAVWATSVGASESNKMAKWCVENTADWNAAASCHAKYRQGVRAEQYAELRDFLKHNPRYRVPGQSLNRCWGKPREMPFESAYIKVDNNGFEAGVNYKDTLPAGCYENAPWDNREAK
Ga0222715_100064356	F077233	GGTGG	MVNMIEYKVEDIFEDDPDNPENVLMNIPPEIAERMGWKPGDTLSIKVENKIMSITKVDNG