Scaffold Ga0222715_10005833

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10005833
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10453
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033780	Metagenome	176	Y
F045719	Metagenome / Metatranscriptome	152	Y
F060870	Metagenome	132	Y
F078657	Metagenome	116	Y
F103171	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1000583310	F078657	GAG	MITYQAWINDLQRDLDQLREDKRELLRKVSDLESLVAEYGNKINNLIQRRGDE
Ga0222715_1000583316	F033780	AGG	MSAGSISPSPWALVAIHWIDAFDSSNGWISIREYKAKPQHVVSVGWLWPDLLEDYVSVTCSYCPDEDPEPDTIGMVTHIPVGMVQKIVNLGTPLF
Ga0222715_1000583320	F103171	AGGAG	MSEQYTRMELRQLAKFLRKVYPGASDQDELWFLIEKTEQLISKGKHATASRRRGDN
Ga0222715_1000583321	F060870	AGG	MDMATASIIVATITAVGGIIVAVINKFRKENQTDHQVVMGILHVVRKSQQRVEDKVDRVDERLDKHLEFHLDGGVLDNERTIHKNGIEATREVSS
Ga0222715_100058339	F045719	AGAAGG	MSATWYKLKSGSWGVKIRHEGTIGDQVEVTNKSGETKEVWLVKRAAKFDDAQLWEVSEEEPEQSAPTLDEEPF