Scaffold Ga0222715_10005117

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10005117
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11240
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (96.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F023856	Metagenome / Metatranscriptome	208	Y
F026889	Metagenome / Metatranscriptome	196	N
F057340	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1000511711	F023856	GGAGG	MRCKACDRILEESELTRKDTHGDFLDLCGICLSATASAGVDTETMQYYQYEIYTEDEKYDTLY
Ga0222715_1000511713	F001655	GGAGG	VKQPENDHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGMHEHFEESVRRTAKALAESYTYWPDGYVHVQTIINQEYVNII
Ga0222715_1000511721	F057340	AGGA	MKRLLLLLLVPGCVIEPDTRICADYGSYTYVKNKCVPLYGALICADEEVTEVFCKRYFDDEKKED
Ga0222715_100051173	F026889	GGAG	MNNVIEEYLALVERTVHTNDIFAYQEIEQLEEQYPELADLVYQSAGPLAYDIQNNEVTS