Scaffold Ga0222715_10004782

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10004782
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11656
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (54.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F004376	Metagenome / Metatranscriptome	441	Y
F088731	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1000478220	F088731	AGGAGG	MIDLKLISTSGDMHPGGLSDKPTIINIDYKHKKSVDAFLKHQNQFYNSSFDKSFPNKSSQKIYKKYLKSFLKLKDLKIFFCKWDFRTNWKYYDY
Ga0222715_1000478227	F004376	AGGA	MKCLDCSFTDGTLLKEFDPEKNYSWYELSEMTEVCAFCGSENIKNDEVKNEKIHY
Ga0222715_1000478228	F001086	AGG	MTDKCTGWAIVTTMERPNKTWYTETITDIDATTAYYVDEFLTDYCEQKEKDKQ