Scaffold Ga0222715_10004354

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10004354
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12319
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013882	Metagenome	267	Y
F020893	Metagenome	221	Y
F040084	Metagenome	162	N
F049592	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1000435414	F020893	GGA	MPTEIYVALISAVAIVSAAVLPAVLIERARRENADDHAYVRKILTRVERKIDNHLEDHDNGTTRRNPAKNKQVG
Ga0222715_1000435415	F040084	GGAGG	MALRDEIQPKINKLAELAKWLDDQPNGEEWYELIYDEQYSNQAVAALLKKHGFVCDFNVVHRFRAKHVAK
Ga0222715_1000435417	F049592	GAG	MAGLDKPLVLVVWHDAHTLDNDHWYDEVDLKDTPCVVHSVGYRISKPNARHLCLAQSITDEQGSDNVLFIPARMVRKVIKLQIPHKRRK
Ga0222715_100043548	F013882	GAGG	VAASASVTIVGIKDTLRKLQKLEPEMAKEIKRDFKQIVDPIVKDARVQVVRLPLSGFSRQWKAGRLTPWAQNAVSKSIIARFSNRRRGNSLAVFSVTMKSPIGTVFDMAGRSNANRLGAVLSTLYGAPSRLMWPSYEKNAERVNDNLRKLTDRITDATNRRLAR