Scaffold Ga0222715_10003727

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10003727
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13482
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F003904	Metagenome / Metatranscriptome	462	Y
F014128	Metagenome / Metatranscriptome	265	Y
F035278	Metagenome / Metatranscriptome	172	Y
F082671	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1000372717	F001732	N/A	MISKIVSITLLVFLVTGCFSTLSPTKLPDQNQKNIANEEKKVDKTLDQLEKNEKGKKIQTSTLAQGIQHSLNQVSNPPVQVTTAKTLNERVVSIVGSPHIDEIKRIKATVDLLNSSLEEERKKGQDLLSQRDEIINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADAAKATLDSMSGMFGLNAVLWGLKKFFISALTAIVIFVVVFVILRLLATVHPAAAAAFSIFNMLGSAVISILKALTPKAFEMSNFATKDKVDEYKSPLVKIVDVIQELKEKQKESPDRVYPLTELLKRFDKEMDSDEKDLIETILKEQKWIK
Ga0222715_1000372719	F003904	AGCAG	MNNLVLNIKKYLFFVLLPVAALVILALSSLKDIEQNYARFRFGRDITLYLRKSTDLLTYLGAAYTTTSDKKFLIQFNDHLKEREKYFNEEIFISKLLTQEETKEFRKGLDISNDLAKDIENPAFASMDNKAMFSDKYLEYKKKIYDNINSFRSMINDSSEKAIKDEIKLLNIYLYLLAAIVLFLVYLIKQDNKAIIKKKPVKKKKR
Ga0222715_100037272	F082671	N/A	MNQLPAFCTINTATSITCPVGKNIYVVAATSGFTAMGQAITISAPISFPIPFMVSTDITLATAKTIFYYIA
Ga0222715_1000372720	F014128	GAG	MEQLQKVGIQIGFLISGLFGAILMATKNEKTDAKSVILSLVGGMSAANFLTPVLVDVLNIVNIKHQNGVAFIAGFLGLKLVELISEKLLEKIGQNSKTPKKRKKK
Ga0222715_100037278	F035278	GGA	MNDKHIKKIIDKQFKIANLDLKYEDVRDNQIPNWYHKYTYSSEDNEKWKNWTMRYMREKMKLTKDKALIETAWIDLNYGLRTSTRSVNNKKKK