NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10001970

Scaffold Ga0222715_10001970


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10001970 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19138
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039606Metagenome / Metatranscriptome163Y
F040004Metagenome / Metatranscriptome162N
F052563Metagenome / Metatranscriptome142N
F057330Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0222715_1000197014F040004GGAMKESRWDIPKPNFQKDLEFGKQGEEQVKQFLQGIVNGSFEVKSDRYRNGKMVVEIAQNPRKHGWKPSGLMITEAEWWVYVYTMNQAMVVVSTERLKRYIKMLPKSRIRLFAEGTNNPAKGYLLLPEEVSQLLYDPAYDDVKE
Ga0222715_1000197017F052563N/AMPNRGPEDWIYDIIPAKQVEEIESKAKSLQQNLDNGVNVVLSATNDSAIKLCRAYYDSTQGNMQAWLHIMGFLDALIGTIEEHLNEEGIDPYAK
Ga0222715_1000197019F057330GAGMRPVIVLWDDAYSEDEWMSVEHYSPKPETPNISIGYLIAYNNDYVHIASTIDQDGGNCCGIMAIPYDMIVYVAPLQILSEAKMYGDKEEFERYLQGKFAQRPEVYEFIEPAEISLETNPEPSA
Ga0222715_100019709F039606AGGAGGMDKDRAIITQVAAKIAADLVNKETDTDAKLGEFATLFTSVKDIIFEAIDGGAPSAEIYEMAKKTFNATPVENSSGESVQIAGKQHGDLPDWLIKACKRDGITKVYDNRDGLKENAKRPWFKAVDADKAYWPPRTRQA
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