NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10001955

Scaffold Ga0222715_10001955


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10001955 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19210
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036214Metagenome170Y
F047030Metagenome / Metatranscriptome150N
F101081Metagenome102N
F104787Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0222715_1000195520F036214GAGVNVLCAGTMDDAAWEWLQMKRDATSAFSIEKEARRLENTPNAGPIAAQLFRAWSMQQDLLQQATHRIAALELQLMDHQADIRH
Ga0222715_1000195525F047030N/AVKGSGKRRICVICESIFDIPQLKHGRDRKSKRITCSQSCHLKLIGKRAKRWTKGEMDIIEQISVSMPPKRLYLTYCRMAAERGYPKRTEAAFRCKLEHMGIPLMPELDYYKFPQLAEMFKTTRHTAYSLRKHGLKAEKESDHGNQPWFVSRAELKRLARKKPGLFRDFDPEGLFVVLEDRELVDLILAQPKVHKAHRYSPTPCRCVETGQEFLGFRDAGRFAFVDPSAIYNSCKFGHRAGGYHWVALR
Ga0222715_1000195527F101081GGAGLAGDPAESRVLMQPTPVDDRIEAILGKYDLWEPDQYRDAIAELTVYLLTLTQEEIKGSLYHQRLEDKIHLENCLMRSDDFSGPRD
Ga0222715_1000195533F104787GGAGGMGRFKLTFNPDDARRVLRQGIEKGRWTLQDLDNPPPGWVLSELDAKRIPGFTPRPYRNLLRDEPAPAERVQITDPRDFAVAQAPANHVQRGSAPLSVGTNGAMAEPLSDQGVQGHEGSVGDEADHGDEAHLGTAWEGGAFGVGNVFDDW
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Institute for Fundamental Biomedical Research
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