Scaffold Ga0222715_10000707

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10000707
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33347
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021101	Metagenome / Metatranscriptome	220	N
F039605	Metagenome / Metatranscriptome	163	N
F042805	Metagenome / Metatranscriptome	157	N
F046347	Metagenome / Metatranscriptome	151	N
F083933	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1000070717	F042805	AGG	MKVTFPGWLGWFEEETLEDKDKVSIIENCFMEIKDVYAEKLLWPSIYMDEDGYDSEDDLEMIWHYSEAQTYLEKYLEENGYNRDYYHIMHVEATFHEPGKEPRKLKFYVKEITCEIRHPGGNCPDEMFKWWVCEDKYGDFDEYIHDIPGENYRIFLYCLNKAWQDVKALPECITKLIDKKRSTIKDDSLRVADEDGRTG
Ga0222715_1000070718	F046347	GAGG	MILYEWQTKMGELVEIYEEMGDHTRANTFSEAVQQIVNHAEQFDISIKTTKDVEKFKGLEGVGRSTLELFKEFVTTGEMKRLRDLRDED
Ga0222715_1000070738	F083933	N/A	MNLYILIIAAILLLAIILNDPMDPQELARFYAPTKTVWGGSVISAPPLITGPPNHTEAYLNNEKTDILPGRRVNHTNGHTITESVQQISVPMRNVSGYVDPSDPPPLPGIKIRDANGLTVIEGAPEIILPPVVYGISLR
Ga0222715_100007074	F039605	N/A	MSLSFESLLSPSYANSVRTPNSVGSATNNYNEAISNFRGSVSMSPFVQKAGFSPKNALVILAFFLMILSSIGTTYAISQIKPTPAQRDALDRIKSAQMNFYNSREGRKTIASVAKNVGIKNLASQKEYMNLAINSNKMVNRIVMRSKIFTISTVRQALDLFGTLGADTQKTVANASGTISGLSGVMFNVIKVAETIAEKDLGPIARIALWGSSLTVGVSMLYGLNPVQMAAIAKGVTGLIAKMYRDRKSYYDMTVTVYKYVVKGVRKMKRSRAVTSN
Ga0222715_100007077	F021101	AGAAG	MWFVPLFIGIHSFFEKKLSPKKTHTLVNMFHMASVFMWNPGFIVSRSYFLADFFLLYKNRRAYPGLWQLLLAHHVVSYAILATEQESEDVDLALKWAEVSNLSLAVYELYPNTFTKTMRVIIYPWSRCAMLPMVLVESTKTLGVKALALGVPIVGGSFWWSWKIIKDFLRK