Scaffold Ga0222715_10000468

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10000468
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40025
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (51.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020347	Metagenome / Metatranscriptome	224	Y
F023807	Metagenome / Metatranscriptome	208	Y
F070027	Metagenome / Metatranscriptome	123	Y
F095417	Metagenome / Metatranscriptome	105	Y
F102116	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1000046818	F102116	GGAGG	MTNLINKLLAFFNIKLVSTKSDTSLVKESVKFLDQHKGYWNDVIFSPPYVGDINYVQEKVKDEFPQVSGKTYICEMIPEKKYYDYNGDTYTAEQLQEKLR
Ga0222715_1000046829	F023807	GAG	MDMVRLIDVKLKYRLELTDEEKEIKDHIMEFQHQVKINELRDKFEKCYEIDKDK
Ga0222715_100004683	F095417	N/A	MIKAFVTWFFSPSRKEMICEEPDIYSKIIELENRIARLEEENIETSNTLYEIMNSIDAVDVRIDILTGENWIEKNV
Ga0222715_100004688	F070027	AGGA	MTSKVNLILALQQIENISNLLRKNNYEAFFTSHLLPVKYEIERQLVLQNGRKEDN
Ga0222715_100004689	F020347	N/A	MNSKTYLYYIAIPALVFFVSATVSYNLTPEKTPEHTSTVVGSSGDLKCTTSCVVKEQ