Scaffold Ga0222716_10333400

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10333400
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 904
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C281 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087034	Metagenome	110	Y
F102075	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_103334002	F102075	N/A	MELEKKLLDHNLVDCVYFFTSYDCRNNMKNRNWFHLNDNLNQDDQKKFFKSIENHRSEIREVIKKNGFKFYTTDADDLSKCHGYYLKNWHDGTKTIDFDPIDDFTEADLGHVKLYYREGGKFKQL
Ga0222716_103334004	F087034	N/A	KIFNLDCYDQQLWVIDNEDFIKNASDEFKSQIKDLNFTTGQSALENLNADFYNQTIKGE