NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10263159

Scaffold Ga0222716_10263159


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10263159 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1058
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009045Metagenome / Metatranscriptome324N
F030153Metagenome / Metatranscriptome186Y
F072288Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_102631591F009045N/ARHIVKGQIIQGDEYEVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEDLNQFALRTESIILGGVK
Ga0222716_102631592F072288AGGAGGMRAFDSNGELDILEEIKDEICEKLSERMRDTAYSEPSTGETHLYNYMVQSLVDRGLADSRAVKIVRALETNNMSALAFSVCACDEWNFPHLLKIEPRIFHMLLQYETDPVLIARLEEVMK
Ga0222716_102631593F030153AGGAGGMSLIVDFTNIREDAKKELNQYQEMIGYYMMAIGMGEITEKNHLEVYARFVLLKASDLSGEKPWITLKMVKALRGAKFNIAFESKAKFSTRMMKITLREVERQEAEEVQDVA
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