Scaffold Ga0222716_10147078

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10147078
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1542
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004438	Metagenome / Metatranscriptome	438	Y
F040125	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_101470782	F040125	AGGAG	MTEESKNEEPIIITFDDLPYRASDLNEEQLPIAVELNEIVPQLQRMEKDHARLSRFKNYLIQDFKRSLEVETPEDTQPEESE
Ga0222716_101470783	F004438	GAGG	MRNITFILISLFATSCATVNSVIEGGKDIAMTTVDTTVKTAGSISGAALKDVSDIVNTVAETYDGVIDTVVENIDEQTDELQNKPEESE