NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10137429

Scaffold Ga0222716_10137429


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10137429 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1609
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006529Metagenome371Y
F025007Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0222716_101374291F006529N/AMTDNKRVSNKQILDKIDDLKVGDEGLNALAIKIVSRMVKLKSMEDWFDHVNKTEIAW
Ga0222716_101374295F025007N/AMNEQDLLLKIEGLEKVIQEKNADASRYQDQLKETKQELIDYNKPELTTKQMVAIEGAVQQVVNDFDFSDTENYEIDYGIDYNGKVHCESHEFNEADELCSLIIDKLCGLFKEVEDDNSQLNTQTVAEKIV

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