Scaffold Ga0222716_10129407

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10129407
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1671
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004162	Metagenome	450	Y
F069990	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_101294071	F069990	N/A	MKKLLYFLVVGVLFTSCQKEEFEIPTNYQFEMTGRTSQDINGYYHVSINSSEDQQSLHRFGAKVTNVDKFNLPTKVIWRCDAFWYTPDTLGHTYIEIGNVPTGESVWSWENFAVTGYEGMTVPIVNGTSHADPQVDSAFCM
Ga0222716_101294075	F004162	N/A	MGKTQKVAILLGEKQKIEKEIEELQRSCQHSTKSIKNVRERLDSTTMVIRYVCDTCLLSIGYPNIKEIEDFLKQ