Scaffold Ga0222716_10076053

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10076053
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2317
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006094	Metagenome / Metatranscriptome	382	Y
F012403	Metagenome / Metatranscriptome	281	Y
F035971	Metagenome / Metatranscriptome	171	N
F049286	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_100760531	F012403	N/A	SLFTIRRKAMRIRPINPVAKALAQSRRRLQTVPDKTKYNRKKDKDDANKSGKDEVTKD
Ga0222716_100760532	F035971	AGGAG	MGNLTWNEVAQKETDKRYMDMYGLSQLDMEDLLHEDMPCMLAMSILSDAQHVMSYDQEQARQFINRAKYVIRHIKSNIGLTSTTNTLTN
Ga0222716_100760536	F006094	AGGAG	MLLHEFYSDEDCSRGDISYRKSCVFKEPDGSYTIVLIQDGAIVEELNLLGHSEQYAEDTAEDWVMGVRR
Ga0222716_100760538	F049286	AGGAG	MPKYEVTRSYIVACVATIEADSHEHAEEIALYDGDVYWKEYDGDYEAEITVEEIDN