Scaffold Ga0222716_10068343

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10068343
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2472
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Chosvirus → Chosvirus KM23C739 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005038	Metagenome / Metatranscriptome	414	Y
F015660	Metagenome	253	N
F035491	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_100683432	F005038	GAG	MKNKDINIYNLFSATYKRKIFSFIGFGELSLMPKLNRPIRQISNIYQFPIKSYYNQKRRV
Ga0222716_100683434	F035491	AGGAGG	MNLRTKPTWELRQIVKALTLPVSSFFNTDEDNERLEQAQIVLYERRLKNSQPIKMEVK
Ga0222716_100683436	F015660	N/A	MANKTKYSKELIDSIMKDLAEGISIKASLKNHSISWECFRKWLLDEKKYPSLRAKYTQAKQDGIEYSLSDAQSLINEAVQDSKFKEKTDLGSTHLIKEFISLAKWRAEKLSPKVYGKNDNLKVSGDKDSPLIVKWNG