Scaffold Ga0222716_10053140

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10053140
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2865
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004345	Metagenome / Metatranscriptome	442	Y
F036682	Metagenome / Metatranscriptome	169	N
F039999	Metagenome / Metatranscriptome	162	Y
F042310	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_100531402	F036682	N/A	MTDKVSGDGAAYVDHDYYWRPLETAPHGVKLQLLSIYGVAAHGLLSPAIIEDGFWIGWTPLPKLKKEKNDN
Ga0222716_100531403	F039999	AGG	MNYEGTADVTLVKENEDGSAVYQFKFPTEAMEALTRLGILTAIQAGIDNAEKLAPDYPSNPEFADEIKDLAEEAGFVMWGDESWRPLGTVVDWANQYDDELIKFYHLVKAKYDRQS
Ga0222716_100531407	F042310	AGGTGG	MVKLEVIEQYGYNKQGICINPFGVKPEWVQKLAHRIRCNHIVTTAEEAPF
Ga0222716_100531408	F004345	GAGG	MIEQLIVGATGLGYLIVGLLQWTKGEGANGMIWIGYAFAQVGLWLNLK